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Genbank格式的基因序列绘制基因的结构图
应用背景
NCBI上很多基因组DNA序列都有结构描述,其中关于内含子结构的描述通常是 CDS join(1..193,290..1284),表示两个外显子,中间一个是内含子位置,有些基因组DNA更复杂,内含子数目可能达到10个以上,看起来眼花缭乱。很多研究者希望把这些结构信息以图形的形式展示,一目了然,容易分析。用这个perl脚本可以方便的绘制图形,只需要把序列下载下来,输入一个命令自动绘图成功!
关键技术
计算机条件:linux系统,我是在ubuntu系统上使用的。网上下载bioperl 安装。安装很简单,bioperl下载后解压到一个盘上,形成一个文件夹。安装Bio::Graphics的方法,在ubuntu的命令行下输入 sudo perl -MCPAN -e"install Bio::Graphics" 即可自动安装。在Ubuntu安装了bioperl,Bio::Graphics后,可以cd到这些perl脚本和文件所在的文件夹下,在linux终端输入命令行, genbankplot.pl NM_172587.gb >1.png,得到的png图像双击就打开,是基因的结构图!!!注意先把NM_172587.gb 这个genbank下载的文件拷贝到bioperl文件夹下。得到的图就像1.png。
- 2022-02-10 02:56:54下载
- 积分:1
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三维模型重建 读取BMP文件,用三角面片法进行重建
三维模型重建 读取BMP文件,用三角面片法进行重建-restruction of 3D model
- 2022-12-11 08:05:04下载
- 积分:1
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VC++6.0的实时曲线图表程序.随着输入数据的变化,图表曲线随之实时的上下波动....
VC++6.0的实时曲线图表程序.随着输入数据的变化,图表曲线随之实时的上下波动.-VC 6.0 real-time graphs procedures. Along with the changes in input data, Real-time charts followed the curve fluctuations.
- 2022-02-02 03:32:51下载
- 积分:1
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局部三维重建
用于从微小的图像曲面片漫反射明暗中提取可用的形状信息的简单表示。这将产生一个包括局部形状分布的中间场景描述符。
- 2022-03-28 21:16:26下载
- 积分:1
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The spectrum sensing of a wideband frequency range is studied by dividing it int...
Cognitive radio frequency spectrum detection-The spectrum sensing of a wideband frequency range is studied by dividing it into multiple subbands.
It is assumed that in each subband either a primary user (PU) is active or absent in a additive white Gaussian
noise environment with an unknown variance. It is also assumed that at least a minimum given number of
subbands are vacant of PUs. In this multiple interrelated hypothesis testing problem, the noise variance is
estimated and a generalised likelihood ratio detector is proposed to identify possible spectrum holes at a
secondary user (SU). Provided that it is known that a specific PU can occupy a subset of subbands
simultaneously, a grouping algorithm which allows faster spectrum sensing is proposed. The collaboration of
multiple SUs can also be considered in order to enhance the detection performance. The collaborative
algorithms are compared in terms of the required exchange information among SUs in some collaboration
- 2022-04-01 19:11:06下载
- 积分:1
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实现白夜窗开关效果,屏幕从上到下打开百叶窗的开关:)
实现白夜窗开关效果,屏幕从上到下打开百叶窗的开关:)-White Night Window Switches to achieve results, the screen from top to bottom to open the blinds Switches :)
- 2022-08-06 12:41:08下载
- 积分:1
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simple drawing board to achieve painting point line, curve, rectangle, circle, a...
简易的画图板 实现画点线,曲线,矩形,圆形,以及色彩的变换,填充等,另外还加入一个小小的文本操作程式。 直接编译后就可以使用。-simple drawing board to achieve painting point line, curve, rectangle, circle, and the color transformation, fill in the blanks, in addition to the text by adding a small operation programs. Directly after the compiler can use.
- 2022-03-18 23:09:53下载
- 积分:1
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filter coefficients to use image processing, image processing can be in effect,...
用滤波器系数来处理图像,可得图像处理效果,进而分析滤波的性能是否符合要求。-filter coefficients to use image processing, image processing can be in effect, and then filtering analysis whether the performance met the requirements.
- 2023-02-15 07:35:04下载
- 积分:1
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用C写的,类似于windos启动时背景颜色变化的程序,实现淡入淡出的效果,纯属好玩。勉强算到图形类吧。...
用C写的,类似于windos启动时背景颜色变化的程序,实现淡入淡出的效果,纯属好玩。勉强算到图形类吧。-written in C, similar to the commencement windos background color changes in the procedures, Fade out of achieving the effect is purely fun. Barely count it to the graphics category.
- 2022-07-02 05:05:12下载
- 积分:1
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This is source code in VC++ for finger print identification
这是指纹识别的程序的源代码,是用VC++编的!-This is source code in VC++ for finger print identification
- 2022-08-15 14:45:00下载
- 积分:1